Page Not Found
Page not found. Your pixels are in another canvas.
Sitemap
A list of all the posts and pages found on the site. For you robots out there is an XML version available for digesting as well.
Pages
About me
About me
Page not in menu
This is a page not in th emain menu
Posts
Future Blog Post
Published:
This post will show up by default. To disable scheduling of future posts, edit config.yml and set future: false.
Blog Post number 4
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 3
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 2
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
Blog Post number 1
Published:
This is a sample blog post. Lorem ipsum I can’t remember the rest of lorem ipsum and don’t have an internet connection right now. Testing testing testing this blog post. Blog posts are cool.
portfolio
Portfolio item number 1
Short description of portfolio item number 1
Portfolio item number 2
Short description of portfolio item number 2
publications
INC-Seq: accurate single molecule reads using nanopore sequencing
Published in Gigascience, 2016
Constructing accurate nanopore sequencing reads
Recommended citation: C Li, et al. (2016). "INC-Seq: accurate single molecule reads using nanopore sequencing." Gigascience . 5(1). https://academic.oup.com/gigascience/article/5/1/s13742-016-0140-7/2720995
An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data
Published in Microbiome, 2019
An EM algorithm for inferring microbial community model from longitudinal microbiome data.
Recommended citation: C Li, et al. (2019). "An expectation-maximization algorithm enables accurate ecological modeling using longitudinal microbiome sequencing data." Microbiome . 7(1). https://microbiomejournal.biomedcentral.com/articles/10.1186/s40168-019-0729-z
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment
Published in Nature Medicine, 2020
Characterization of hospital microbiome.
Recommended citation: K R Chng, C Li, D Bertrand et al. (2020). "Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment." Nature Medicine. 26(6). https://www.nature.com/articles/s41591-020-0894-4
Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity
Published in Journal of Allergy and Clinical Immunology, 2021
Identify microbial signatures on AD skin that are predictive of disease fate.
Recommended citation: A Tay, C Li, T Nandi, et al. (2021). "Atopic dermatitis microbiomes stratify into ecologic dermotypes enabling microbial virulence and disease severity" Journal of Allergy and Clinical Immunology. 147(4). https://www.sciencedirect.com/science/article/abs/pii/S0091674920313993
BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data
Published in PLoS Computational Biology, 2021
An EM algorithm for inferring microbial community model from cross-sectional microbiome data.
Recommended citation: C Li, et al. (2021). "BEEM-Static: Accurate inference of ecological interactions from cross-sectional microbiome data." PLoS Computational Biology . 17(9). https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009343
Genetic vulnerability to Crohn’s disease reveals a spatially resolved epithelial restitution program
Published in Science Translational Medicine, 2023
HGFAC variant characterization.
Recommended citation: T Nakata, C Li, et al. (2023). "Genetic vulnerability to Crohn’s disease reveals a spatially resolved epithelial restitution program." Science Translational Medicine. 15(719). https://www.science.org/doi/abs/10.1126/scitranslmed.adg5252
Gut microbiome and metabolome profiling in Framingham Heart Study reveals cholesterol-metabolizing bacteria linked with lower cardiovascular risk
Published in Cell, 2024
Oscillibacter metabolizes cholesterol in the gut
Recommended citation: C Li, et al. (2024). "Gut microbiome and metabolome profiling in Framingham Heart Study reveals cholesterol-metabolizing bacteria linked with lower cardiovascular risk." Cell . 8674(24). https://www.cell.com/cell/fulltext/S0092-8674(24)00305-2
Spatially restricted immune and microbiota-driven adaptation of the gut
Published in Nature, 2024
Molecular cartography of mouse gut
Recommended citation: T Mayassi, C Li, et al. (2024). "Spatially restricted immune and microbiota-driven adaptation of the gut" Nature ." https://www.nature.com/articles/s41586-024-08216-z
talks
Talk 1 on Relevant Topic in Your Field
Published:
This is a description of your talk, which is a markdown files that can be all markdown-ified like any other post. Yay markdown!
Conference Proceeding talk 3 on Relevant Topic in Your Field
Published:
This is a description of your conference proceedings talk, note the different field in type. You can put anything in this field.
teaching
Teaching experience 1
Undergraduate course, University 1, Department, 2014
This is a description of a teaching experience. You can use markdown like any other post.
Teaching experience 2
Workshop, University 1, Department, 2015
This is a description of a teaching experience. You can use markdown like any other post.